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Taxonomy browser (Oryza rufipogon)

Oryza rufipogon

Taxonomy ID: 4529 (for references in articles please use NCBI:txid4529)
current name
Oryza rufipogon Griff., 1851
NCBI BLAST name: monocots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
common name(s) common wild rice, red rice
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
   Entrez records   
Database name Direct links
Nucleotide 169,623
Protein 6,988
Popset 914
GEO Datasets 59
PubMed Central 983
Gene 343
SRA Experiments 1,801
Identical Protein Groups 2,115
BioProject 91
BioSample 2,644
Datasets Genome 67
Taxonomy 1

Comments and References:

GRIN (Oct 18, 2016)
Name accessed on 18 October 2016 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.
Flora of China - Poaceae
Chen S-L et al. 2006. Poaceae (R. Brown) Barnhart. In Wu, Z. Y., P. H. Raven & D. Y. Hong, eds. Flora of China. Vol. 22 (Poaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis. Online at Flora of China: www.efloras.org
Zheng XM & Ge S 2010
Zheng XM and Ge S. 2010. Ecological divergence in the presence of gene flow in two closely related Oryza species (Oryza rufipogon and O. nivara). Molecular Ecology 19(12): 2439-2454.
Caicedo AL et al. 2007, other link:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1994709/?tool=pmcentrez
Caicedo AL, Williamson SH, Hernandez RD, Boyko A, Fledel-Alon A, York TL, Polato NR, Olsen KM, Nielsen R, McCouch SR, Bustamante CD, and Purugganan MD. 2007. Genome-wide patterns of nucleotide polymorphism in domesticated rice. PLoS Genetics 2007 September; 3(9): e163. Prepublished online 2007 August 6. Published online 2007 September 28. doi: 10.1371/journal.pgen.0030163.
Sweeney M & McCouch S 2007, other link:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2759204/?tool=pubmed
Sweeney M and McCouch S. 2007. The complex history of the domestication of rice. Annals of Botany 100(5): 951-957.
Garris et al. 2005, other link:http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1449546/?tool=pubmed
Garris AJ, Tai TH, Coburn J, Kresovich S, McCouch S. 2005. Genetic structure and diversity in Oryza sativa L. Genetics. 2005 Mar;169(3):1631-8. Epub 2005 Jan 16.

Genome Information

Go to NCBI genomic BLAST page for Oryza rufipogon

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
5 records from this provider supplemental materials Dryad Digital Repository
Oryza rufipogon Griffiths taxonomy/phylogenetic Encyclopedia of life
GOLD: 5 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Oryza rufipogon Griffiths taxonomy/phylogenetic Integrated Taxonomic Information System
Oryza rufipogon taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Oryza rufipogon taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Oryza rufipogon (Griff.) herbarium/museum collections PlantaeDB, University of Bucharest
Oryza rufipogon taxonomy/phylogenetic Plants of the World Online
Oryza rufipogon taxonomy/phylogenetic The International Plant Names Index
Oryza rufipogon Griff. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
2 records from this provider organism-specific WebScipio - eukaryotic gene identification
3 records from this provider organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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