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Taxonomy browser (Escherichia coli APEC O1)

Escherichia coli APEC O1

Taxonomy ID: 405955 (for references in articles please use NCBI:txid405955)
Scientific name: Escherichia coli APEC O1
equivalent: Escherichia coli str. APEC O1
equivalent: Escherichia coli strain APEC O1
Inherited blast name: enterobacteria
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
   Entrez records   
Database name Direct links
Nucleotide 107
Protein 11,002
Structure 5
Genome 1
GEO Datasets 6
PubMed Central 3
Gene 5,102
SRA Experiments 6
Identical Protein Groups 6,960
Bio Project 4
Bio Sample 94
Bio Systems 315
Assembly 1
Probe 2
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Reference to PubMed documentJohnson TJ et al. (2007)
Johnson, T.J., Kariyawasam, S., Wannemuehler, Y., Mangiamele, P., Johnson, S.J., Doetkott, C., Skyberg, J.A., Lynne, A.M., Johnson, J.R., and Nolan, L.K. "Genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human ExPEC genomes." J. Bacteriol. (2007) 189:3228-3236.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Escherichia coli meta-databases BacDive
Escherichia coliAPEC O1 organism-specific BioCyc
GOLD: Go0000219 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
640753023: Escherichia coli sv. O1:K1:H7 APEC organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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