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Taxonomy browser (Ruminiclostridium cellulolyticum H10)

Ruminiclostridium cellulolyticum H10

Taxonomy ID: 394503 (for references in articles please use NCBI:txid394503)
Scientific name: Ruminiclostridium cellulolyticum H10
NCBI BLAST® name: firmicutes
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym: Clostridium cellulolyticum H10
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Clostridiales; Hungateiclostridiaceae; Ruminiclostridium; Ruminiclostridium cellulolyticum
   Entrez records   
Database name Direct links
Nucleotide 22
Protein 6,898
Structure 6
Genome 1
Popset 1
PubMed Central 7
Gene 3,579
SRA Experiments 13
Identical Protein Groups 3,520
Bio Project 2
Bio Sample 13
Bio Systems 162
Assembly 1
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Reference to PubMed documentHemme CL et al. (2010)
Hemme, C.L., Mouttaki, H., Lee, Y.-J., Goodwin, L., Lucas, S., Copeland, A., Lapidus, A., Glavina del Rio, T., Tice, H., Saunders, E., Brettin, T., Detter, J.C., Han, C.S., Pitluck, S., Land, M.L., Hauser, L.J., Krypides, N., Mikhailova, N., He, Z., Wu, L., Van Nostrand, J.D., Henrissat, B., He, Q., Lawson, P.A., Tanner, R.S., Lynd, L.R., Wiegel, J., Fields, M.W., Arkin, A.P., Schadt, C.W., Stevenson, B.S., McInerney, M.J., Yang, Y., Dong, H., Huhnke, R.L., Mielenz, J.R., Ding, S.-Y., Himmel, M.E., Taghavi, S., van der Lelie, D., Rubin, E.M., and Zhou, J. "Sequencing of multiple Clostridia genomes related to biomass conversion and biofuels production." J. Bacteriol. (2010) 192:6494-6496.


Genome Information

   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
454 WGS ALL
JGI - Joint Genome Institute, U.S. Department of Energy
331,729 54,755 386,484
Totals per type
331,729 54,755 386,484

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Clostridium cellulolyticum meta-databases BacDive
[Clostridium] cellulolyticumH10; ATCC 35319 organism-specific BioCyc
GOLD: Go0002245 organism-specific Genomes On Line Database
643348528: Ruminiclostridium cellulolyticum H10 organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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