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Taxonomy browser (Pinus taeda)

Pinus taeda

Taxonomy ID: 3352 (for references in articles please use NCBI:txid3352)
Scientific name: Pinus taeda L.
Genbank common name: loblolly pine
NCBI BLAST® name: seed plants
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
   Entrez records   
Database name Direct links
Nucleotide 450,022
Protein 33,872
Structure 1
Genome 1
Popset 6,927
GEO Datasets 210
UniGene 17,379
PubMed Central 1,228
Gene 194
SRA Experiments 3,179
GEO Profiles 9,216
Identical Protein Groups 5,343
Bio Project 20
Bio Sample 2,861
Assembly 3
Probe 1,023
Taxonomy 1

Comments and References:

Nota BeneFNA - Pinaceae
Thieret JW. Pinaceae Lindley. 1993. In Flora of North America Editorial Committee (Eds.) Flora of North America North of Mexico, Vol. 2: Pteridophytes and Gymnosperms. New York and Oxford. On-line version.

Nota BeneGymnosperm Database
Name verified on date of entry into taxonomy database in: Earle, CJ. 2004 onward. The Gymnosperm Database. (on-line)

Nota BeneGRIN (Apr 16, 2009)
Name verified on 16 April 2009 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.

Nota BeneFlora of China - Pinaceae
Liguo Fu, Nan Li, Thomas S. Elias & Robert R. Mill. Pinaceae Lindley. In Wu, Z. Y. & P. H. Raven, eds. July 1999. Flora of China. Vol. 4 (Cycadaceae through Fagaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis.

Nota BeneFNA - Pinus
Kral R. 1993. Pinus Linnaeus, Sp. Pl. 2: 1000. ; Gen Pl. ed. 5. 1753; Gen. Pl. ed. 5, 434, 1754. In Flora of North America Editorial Committee (Eds.) Flora of North America North of Mexico, Vol. 2: Pteridophytes and Gymnosperms. New York and Oxford. On-line version.

Genome Information

Go to NCBI genomic BLAST® page for Pinus taeda
Genome view: 13 chromosomes
Names LG1 LG2 LG3 LG4 LG5 LG6 LG7 LG8 LG9 LG10 LG11 LG12 Pltd
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
JCVI - J. Craig Venter Institute
81,519 - - - 81,519
MGEL - Mississippi Genome Exploration Laboratory
- - 3,264 1,528 4,792
NCSUFBG - NC State University Forest Biotechnology Group
58,481 - - - 58,481
UCD_DPS - University of California at Davis, Department of Plant Sciences
- 241,796 - - 241,796
UGALGB - Laboratory for Genomics and Bioinformatics, University of Georgia
172,229 - - - 172,229
Totals per type
312,229 241,796 3,264 1,528 558,817

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pinus taeda taxonomy taxonomy/phylogenetic Arctos Specimen Database
Pinus taeda images images
Pinus taeda L. taxonomy/phylogenetic Encyclopedia of life
GOLD Multi-Isolate Organism: Go0006367 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
Pinus taeda L. taxonomy/phylogenetic Integrated Taxonomic Information System
Pinus taeda taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
plazi taxonomy/phylogenetic Plazi
Pinus taeda taxonomy/phylogenetic The International Plant Names Index
Pinus taeda L. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Pinus taeda organism-specific WebScipio - eukaryotic gene identification
diArk: Pinus taeda organism-specific diArk - a resource for eukaryotic genome research
Pinus taeda taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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