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Taxonomy browser (Escherichia coli HS)

Escherichia coli HS

Taxonomy ID: 331112 (for references in articles please use NCBI:txid331112)
Scientific name: Escherichia coli HS
equivalent: Escherichia coli str. HS
equivalent: Escherichia coli strain HS
Inherited blast name: enterobacteria
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
   Entrez records   
Database name Direct links
Nucleotide 94
Protein 9,626
Structure 4
Genome 1
GEO Datasets 20
PubMed Central 6
Gene 4,637
SRA Experiments 14
Identical Protein Groups 5,095
Bio Project 4
Bio Sample 15
Bio Systems 322
Assembly 1
Probe 2
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Reference to PubMed documentRasko DA et al. (2008)
Rasko, D.A., Rosovitz, M.J., Myers, G.S., Mongodin, E.F., Fricke, W.F., Gajer, P., Crabtree, J., Sperandio, V., and Ravel, J. "The pan-genome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates." J. Bacteriol. (2008) 190:6881-6893.


Genome Information

See the TRACE Assembly
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
PRIMERWALK TRANSPOSON WGS ALL
JCVI - J. Craig Venter Institute
1,046 536 61,749 63,331
Totals per type
1,046 536 61,749 63,331

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Escherichia coli meta-databases BacDive
Escherichia coliHS organism-specific BioCyc
GOLD: Go0000062 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
640753025: Escherichia coli sv. O9 HS organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers



Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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