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Taxonomy browser (Physcomitrium patens)

Physcomitrium patens

Taxonomy ID: 3218 (for references in articles please use NCBI:txid3218)
current name
Physcomitrium patens (Hedw.) Mitt., 1851
Phascum patens Hedw., 1801
homotypic synonym:
Physcomitrella patens (Hedw.) Bruch & Schimp., 1849
Physcomitrella patens subsp. patens
NCBI BLAST name: mosses
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrium
   Entrez records   
Database name Direct links
Nucleotide 621,267
Protein 81,881
Structure 39
Genome 1
Popset 57
Conserved Domains 2
GEO Datasets 420
PubMed Central 6,713
Gene 59,685
SRA Experiments 1,870
Protein Clusters 9,051
Identical Protein Groups 46,044
BioProject 356
BioSample 1,799
Assembly 5
Taxonomy 1

Comments and References:

image:Physcomitrium patens
FNA - Physcomitrella
Goffinet B. 2007. Physcomitrella Bruch & Schimper, Bryol. Europ. 1: 13. 1849. In Flora of North America Editorial Committee (Eds.) Flora of North America North of Mexico, Vol. 27: Bryophytes: Mosses, Part 1. New York and Oxford. On-line version.
FNA - Funariaceae
McIntosh TT. 2007. Funariaceae Schaewgrichen. In Flora of North America Editorial Committee (Eds.) Flora of North America North of Mexico, Vol. 27: Bryophytes: Mosses, Part 1. New York and Oxford. On-line version.
Beike AK et al. 2014, other link:
Beike AK, Von Stackelberg M, Hanke ST, Follo M, Quandt D, McDaniel S, Reski R, Tan BC, Frahm J-P and Rensing SA. 2014. Molecular evidence for convergent evolution and allopolyploid speciation within the Physcomitrium-Physcomitrella species complex. BMC Evolutionary Biology 14 (1), 158.
Medina R et al. (2019), doi:10.1111/jse.12516
Medina R, Johnson MG, Liu Y, Wickett NJ, Shaw AJ, Goffinet B. 2019. Phylogenomic delineation of Physcomitrium (Bryophyta: Funariaceae) based on targeted sequencing of nuclear exons and their flanking regions rejects the retention of Physcomitrella, Physcomitridium and Aphanorrhegma. Journal of Systematics Evolution 57(4):404-417.

Genome Information

Go to NCBI genomic BLAST page for Physcomitrium patens
Genome view: 27 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Physcomitrella patens taxonomy taxonomy/phylogenetic Arctos Specimen Database
Physcomitrella patens Bruch & W. P. Schimper in B. S. G., 1849 taxonomy/phylogenetic Encyclopedia of life
4 records from this provider organism-specific Genomes On Line Database
2 records from this provider organism-specific Integrated Microbial Genomes
Physcomitrella patens (Hedw.) Bruch & Schimp. in B.S.G. taxonomy/phylogenetic Integrated Taxonomic Information System
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Physcomitrella patens taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Physcomitrium patens ((Hedw.) Mitt.) herbarium/museum collections PlantaeDB, University of Bucharest
Physcomitrella patens taxonomy/phylogenetic TreeBase
WebScipio: Physcomitrella patens organism-specific WebScipio - eukaryotic gene identification
diArk: Physcomitrella patens organism-specific diArk - a resource for eukaryotic genome research
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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