Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy Books
   
Taxonomy browser (Agrobacterium vitis S4)

Agrobacterium vitis S4

Taxonomy ID: 311402 (for references in articles please use NCBI:txid311402)
Scientific name: Agrobacterium vitis S4
equivalent: Agrobacterium vitis str. S4
equivalent: Agrobacterium vitis strain S4
Inherited blast name: a-proteobacteria
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium vitis
   Entrez records   
Database name Direct links
Nucleotide 19
Protein 11,242
Structure 10
Genome 1
PubMed Central 4
Gene 11,394
Identical Protein Groups 6,415
Bio Project 2
Bio Sample 1
Bio Systems 257
Assembly 1
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Reference to PubMed documentSlater SC et al. (2009)
Slater, S.C., Goldman, B.S., Goodner, B., Setubal, J.C., Farrand, S.K., Nester, E.W., Burr, T.J., Banta, L., Dickerman, A.W., Paulsen, I., Otten, L., Suen, G., Welch, R., Almeida, N.F., Arnold, F., Burton, O.T., Du, Z., Ewing, A., Godsy, E., Heisel, S., Houmiel, K.L., Jhaveri, J., Lu, J., Miller, N.M., Norton, S., Chen, Q., Phoolcharoen, W., Ohlin, V., Ondrusek, D., Pride, N., Stricklin, S.L., Sun, J., Wheeler, C., Wilson, L., Zhu, H., and Wood, D.W. "Genome sequences of three Agrobacterium biovars help elucidate the evolution of multi-chromosome genomes in bacteria." J. Bacteriol. (2009) 191:2501-2511.


Genome Information

   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
SHOTGUN ALL
MGSC - Monsanto Genome Sequencing Center
79,776 79,776
Totals per type
79,776 79,776

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Allorhizobium vitis meta-databases BacDive
Agrobacterium vitisS4 organism-specific BioCyc
GOLD: Go0006682 organism-specific Genomes On Line Database
643348505: Agrobacterium vitis bv. III S4 organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers



Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]