Taxonomy browser Taxonomy Browser (Pseudomonas protegens Pf-5)

Entrez records
Database name	Direct links	Subtree links	Links from type
BioProject	59	59	-
BioSample	196	196	-
GEO DataSets	60	60	-
Gene	6,642	6,642	-
Identical Protein Groups	6,929	6,929	-
Nucleotide	337	337	-
Protein	13,480	13,480	-
SRA	176	176	-
Structure	90	90	-
Taxonomy	1	1	-

Pseudomonas protegens Pf-5

Taxonomy ID: 220664 (for references in articles please use ncbitaxon:220664)

current name

Pseudomonas protegens Pf-5

equivalent:

Pseudomonas protegens strain Pf-5

NCBI BLAST name: g-proteobacteria
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym Pseudomonas fluorescens Pf-5

heterotypic synonym Pseudomonas sp. Pf-5

Lineage(full): cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas chlororaphis group; Pseudomonas protegens

Comments and References:

genome sequence

Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Paulsen IT et al. (2005)

Paulsen, I.T., Press, C.M., Ravel, J., Kobayashi, D.Y., Myers, G.S., Mavrodi, D.V., DeBoy, R.T., Seshadri, R., Ren, Q., Madupu, R., Dodson, R.J., Durkin, A.S., Brinkac, L.M., Daugherty, S.C., Sullivan, S.A., Rosovitz, M.J., Gwinn, M.L., Zhou, L., Schneider, D.J., Cartinhour, S.W., Nelson, W.C., Weidman, J., Watkins, K., Tran, K., Khouri, H., Pierson, E.A., Pierson, L.S. 3rd, Thomashow, L.S., and Loper, J.E. "Complete genome sequence of the plant commensal Pseudomonas fluorescens Pf-5." Nat. Biotechnol. (2005) 23:873-878. [Erratum: Nat. Biotechnol. (2006) 24:466.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Pseudomonas protegens type strain (BD-ID 13154)	meta-databases	BacDive
GOLD: Go0000479	organism-specific	Genomes On Line Database
637000220: Pseudomonas protegens Pf-5	organism-specific	Integrated Microbial Genomes
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
Pseudomonas protegens type strain (SI-ID 380598)	meta-databases	StrainInfo, Leibniz Institute DSMZ

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.