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Taxonomy browser (Lactobacillus casei subsp. casei ATCC 393)

Lactobacillus casei subsp. casei ATCC 393

Taxonomy ID: 219334 (for references in articles please use NCBI:txid219334)
Scientific name: Lactobacillus casei subsp. casei ATCC 393
equivalent: Lactobacillus [casei subsp. casei] ATCC 393
NCBI BLAST® name: firmicutes
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; Lactobacillus casei group; Lactobacillus casei
   Entrez records   
Database name Direct links
Nucleotide 55
Protein 5,403
Structure 3
Genome 1
Popset 6
Identical Protein Groups 3,153
Bio Project 2
Bio Sample 1
Assembly 1
Probe 1
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

DSM 20011 vis-a-vis JCM 1134 = ATCC 393
The genome sequence of L. casei type strain DSM 20011 (accession AZCO01000000) does not match that of type strain JCM 1134 (accession BALS01000000) or of type strain ATCC 393 (accession AP012544). It is more similar to those of L. paracasei subps. paracasei type strain ATCC 25302 (accession ACGY01000000) and L. paracasei subsp. tolerans type strain DSM 20258 (accession AYYJ01000000).

Reference to PubMed documentToh H et al. (2013)
Toh, H., Oshima, K., Nakano, A., Takahata, M., Murakami, M., Takaki, T., Nishiyama, H., Igimi, S., Hattori, M., and Morita, H. "Genomic adaptation of the Lactobacillus casei group." PLoS ONE (2013) 8:e75073.


External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Lactobacillus casei meta-databases BacDive
GOLD: Go0001198 organism-specific Genomes On Line Database
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
2630968676: Lactobacillus casei casei ATCC 393 organism-specific Integrated Microbial Genomes
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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