Taxonomy browser Taxonomy Browser (Bifidobacterium scaligerum)

Entrez records
Database name	Direct links	Subtree links	Links from type
BioProject	1	1	-
BioSample	1	1	-
Identical Protein Groups	2,398	2,398	-
Nucleotide	49	49	48
PMC	4	4	-
Protein	4,000	4,000	-
Taxonomy	1	1	-

Bifidobacterium scaligerum

Taxonomy ID: 2052656 (for references in articles please use ncbitaxon:2052656)

current name

Bifidobacterium scaligerum Modesto et al. 2020 in [Validation List No. 192 (2020)]

type strain of Bifidobacterium scaligerum: personal : TRE D , DSM : 103140 , JCM : 31792

includes:

Bifidobacterium sp. TRE D

homotypic synonym:

"Bifidobacterium scaligerum" Modesto et al. 2018 , effective name¹⁾ in [Modesto M et al. (2018)]

NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage(full): cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

Modesto M et al. (2018) , Pubmed: abstract

Modesto, M., Puglisi, E., Bonetti, A., Michelini, S., Spiezio, C., Sandri, C., Sgorbati, B., Morelli, L., and Mattarelli, P. "Bifidobacterium primatium sp. nov., Bifidobacterium scaligerum sp. nov., Bifidobacterium felsineum sp. nov. and Bifidobacterium simiarum sp. nov.: four novel taxa isolated from the faeces of the cotton top tamarin (Saguinus oedipus) and the emperor tamarin (Saguinus imperator)." Syst. Appl. Microbiol. (2018) 41(6):593-603.

Validation List No. 192 (2020) , Pubmed: abstract

Validation List No. 192. "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2020) 70(3):1443-1446.

Puglisi E et al. (2018)

Puglisi, E., Mattarelli, P., Modesto, M., Bonetti, A., Spiezio, C., Sandri, C., and Morelli, L. "Draft genome sequences of strains TRE 1, TRE D, TRE H, and TRI 7, isolated from tamarins and belonging to four putative novel Bifidobacterium species." Genome Announc. (2018) 6:e01449-17.

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Bifidobacterium scaligerum type strain (BD-ID 159318)	meta-databases	BacDive
GOLD: Go0448959	organism-specific	Genomes On Line Database
2791355238: Bifidobacterium scaligerum TRE D	organism-specific	Integrated Microbial Genomes
Bifidobacterium scaligerum \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry
Bifidobacterium scaligerum type strain (SI-ID 404271)	meta-databases	StrainInfo, Leibniz Institute DSMZ

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A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.