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Taxonomy browser (Clostridium perfringens ATCC 13124)

Clostridium perfringens ATCC 13124

Taxonomy ID: 195103 (for references in articles please use NCBI:txid195103)
Scientific name: Clostridium perfringens ATCC 13124
equivalent: Clostridium perfringens str. ATCC 13124
equivalent: Clostridium perfringens strain ATCC 13124
NCBI BLAST® name: firmicutes
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; Clostridium perfringens
   Entrez records   
Database name Direct links
Nucleotide 38
Protein 6,133
Structure 37
Genome 1
Popset 1
GEO Datasets 3
PubMed Central 11
Gene 5,973
SRA Experiments 416
Identical Protein Groups 3,072
Bio Project 6
Bio Sample 413
Bio Systems 161
Assembly 1
Probe 1
PubChem BioAssay 3
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Reference to PubMed documentMyers GS et al. (2006)
Myers, G.S., Rasko, D.A., Cheung, J.K., Ravel, J., Seshadri, R., DeBoy, R.T., Ren, Q., Varga, J., Awad, M.M., Brinkac, L.M., Daugherty, S.C., Haft, D.H., Dodson, R.J., Madupu, R., Nelson, W.C., Rosovitz, M.J., Sullivan, S.A., Khouri, H., Dimitrov, G.I., Watkins, K.L., Mulligan, S., Benton, J., Radune, D., Fisher, D.J., Atkins, H.S., Hiscox, T., Jost, B.H., Billington, S.J., Songer, J.G., McClane, B.A., Titball, R.W., Rood, J.I., Melville, S.B., and Paulsen, I.T. "Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens." Genome Res. (2006) 16:1031-1040.


Genome Information

See the TRACE Assembly
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
PRIMERWALK WGS ALL
TIGR - The Institute for Genome Research
2,521 51,622 54,143
Totals per type
2,521 51,622 54,143

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Clostridium perfringens meta-databases BacDive
Clostridium perfringensATCC 13124 organism-specific BioCyc
GOLD: Go0000322 organism-specific Genomes On Line Database
637000077: Clostridium perfringens ATCC 13124 organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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