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Taxonomy browser (Clavibacter capsici)

Clavibacter capsici

Taxonomy ID: 1874630 (for references in articles please use NCBI:txid1874630)
current name
Clavibacter capsici (Oh et al. 2016) Li et al. 2018 in [Li X et al. (2018)]
basionym:
Clavibacter michiganensis subsp. capsici Oh et al. 2016
type strain of Clavibacter michiganensis subsp. capsici: personal::PF008, KACC:18448, BCCM/LMG:29047
homotypic synonym:
Clavibacter capsici (Oh et al. 2016) Nouioui et al. 2018, nom. illeg. 1) in [Nouioui I et al. (2018c), Validation List No. 184 (2018)]
NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae; Clavibacter
   Entrez records   
Database name Direct links Links from type
Nucleotide 138 15
Protein 19,862 -
PubMed Central 6 -
SRA Experiments 1 -
Identical Protein Groups 9,521 -
BioProject 3 -
BioSample 5 1
Datasets Genome 5 -
Taxonomy 1 -

Notes:

Comments and References:

Li X et al. (2018), doi: 10.1099/ijsem.0.002492, PubMed: abstract
Li, X., Tambong, J., Yuan, K.X., Chen, W., Xu, H., Levesque, C.A., and De Boer, S.H. "Re-classification of Clavibacter michiganensis subspecies on the basis of whole-genome and multi-locus sequence analyses." Int. J. Syst. Evol. Microbiol. (2018) 68(1):234-240.
Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract
Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.
Validation List No. 184 (2018), PubMed: abstract
Validation List No. 184: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2018) 68(11):3379-3393.
Oh EJ et al. (2016)
Oh, E.-J., Bae, C., Lee, H.-B., Hwang, I.S., Lee, H.-I., Yea, M.C., Yim, K.-O., Lee, S., Heu, S., Cha, J.-S., and Oh, C.-S. "Clavibacter michiganensis subsp. capsici subsp. nov., causing bacterial canker disease in pepper." Int. J. Syst. Evol. Microbiol. (2016) 66:4065-4070.
Oren A & Garrity GM (2018), doi:10.1099/ijs
Oren, A., & Garrity, G.M. "Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 68, part 1, of the IJSEM." Int. J. Syst. Evol. Microbiol. (2018) 68:979-981. [N.B.: List Editors state that the names Clavibacter capsici, Clavibacter insidiosus, Clavibacter nebrasksensis, Clavibacter sepedonicus and Clavibacter tesselarius proposed by Li et al. are illegitimate as they contravene Rule 34a and 50a of the International Code of Nomenclature of Prokaryotes. The use of illegitimate names contravenes Rule 51a. Counterargument is presented by Tindall (2019).]
Tindall BJ (2019b), doi:10.1099/ijsem.0.003529
Tindall, B.J. "The role of incorrect citation of the International Code of Nomenclature of Prokaryotes and subsequent misinterpretation in causing unnecessary nomenclatural confusion." Int. J. Syst. Evol. Microbiol. (2019) 69(8):2621-2625.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Clavibacter capsici meta-databases BacDive - Free access to bacterial information database
GOLD: 4 Organisms organism-specific Genomes On Line Database
2 records from this provider organism-specific Integrated Microbial Genomes
Clavibacter capsici | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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