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Taxonomy browser (Streptococcus pneumoniae TIGR4)

Streptococcus pneumoniae TIGR4

Taxonomy ID: 170187 (for references in articles please use NCBI:txid170187)
Scientific name: Streptococcus pneumoniae TIGR4
NCBI BLAST® name: firmicutes
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym: Streptococcus pneumoniae ATCC BAA-334
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pneumoniae
   Entrez records   
Database name Direct links
Nucleotide 592
Protein 5,490
Structure 223
Genome 1
Popset 5
GEO Datasets 359
PubMed Central 33
Gene 2,313
SRA Experiments 1,346
Identical Protein Groups 2,966
Bio Project 22
Bio Sample 1,331
Bio Systems 170
Assembly 4
Probe 42
PubChem BioAssay 1
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.

Reference to PubMed documentTettelin H et al. (2001)
Tettelin, H., Nelson, K.E., Paulsen, I.T., Eisen, J.A., Read, T.D., Peterson, S., Heidelberg, J., DeBoy, R.T., Haft, D.H., Dodson, R.J., Durkin, A.S., Gwinn, M., Kolonay, J.F., Nelson, W.C., Peterson, J.D., Umayam, L.A., White, O., Salzberg, S.L., Lewis,M.R., Radune, D., Holtzapple, E., Khouri, H., Wolf, A.M., Utterback, T.R., Hansen, C.L., McDonald, L.A., Feldblyum, T.V., Angiuoli, S., Dickinson, T., Hickey, E.K., Holt, I.E., Loftus, B.J., Yang, F., Smith, H.O., Venter, J.C., Dougherty, B.A., Morrison,D.A., Hollingshead, S.K., and Fraser, C.M. "Complete genome sequence of a virulent isolate of Streptococcus pneumoniae." Science (2001) 293:498-506.


Genome Information

See the TRACE Assembly
   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
454 PRIMERWALK TRANSPOSON WGS ALL
454MSC - 454 Life Sciences
1,063,193 - - - 1,063,193
TIGR - The Institute for Genome Research
- 2,885 300 42,989 46,174
Totals per type
1,063,193 2,885 300 42,989 1,109,367

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Streptococcus pneumoniae meta-databases BacDive
Streptococcus pneumoniae TIGR4; ATCC BAA-334 organism-specific BioCyc
dryaddb supplemental materials Dryad Digital Repository
2 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
3 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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