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Taxonomy browser (Caldicellulosiruptor danielii)

Caldicellulosiruptor danielii

Taxonomy ID: 1387557 (for references in articles please use NCBI:txid1387557)
Scientific name: Caldicellulosiruptor danielii
includes: Caldicellulosiruptor sp. Wai35.B1
NCBI BLAST® name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor
   Entrez records   
Database name Direct links
Nucleotide 5
Protein 2,516
Structure 3
Genome 1
PubMed Central 1
SRA Experiments 6
Identical Protein Groups 2,504
Bio Project 2
Bio Sample 1
Assembly 1
Taxonomy 1

Comments and References:

Effective publication
This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Bacteria (Bacteriological Code).

Reference to PubMed documentLee LL et al. (2015)
Lee, L.L., Izquierdo, J.A., Blumer-Schuette, S.E., Zurawski, J.V., Conway, J.M., Cottingham, R.W., Huntemann, M., Copeland, A., Chen, I-M.A., Kyrpides, N., Markowitz, V., Palaniappan, K., Ivanova, N., Mikhailova, N., Ovchinnikova, G., Andersen, E., Pati, A., Stamatis, D., Reddy, T.B.K., Shapiro, N., Nordberg, H.P., Cantor, M.N., Hua, S.X., Woyke, T., and Kelly, R.M. "Complete genome sequences of Caldicellulosiruptor sp. strain Rt8.B8, Caldicellulosiruptor sp. strain Wai35.B1, and 'Thermoanaerobacter cellulolyticus'." Genome Announc. (2015) 3:e00440-15.

Reference to PubMed documentLee LL et al. (2018)
Lee, L.L., Blumer-Schuette, S.E., Izquierdo, J.A., Zurawski, J.V., Loder, A.J., Conway, J.M., Elkins, J.G., Podar, M., Clum, A., Jones, P.C., Piatek, M.J., Weighill, D.A., Jacobson, D.A., Adams, M.W.W., and Kelly, R.M. "Genus-wide assessment of lignocellulose utilization in the extremely thermophilic genus Caldicellulosiruptor by genomic, pangenomic, and metagenomic analyses." Appl. Environ. Microbiol. (2018) 84:e02694-17.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
GOLD: Go0035187 organism-specific Genomes On Line Database
2558860987: Caldicellulosiruptor sp. Wai35.B1, DSM 8977 organism-specific Integrated Microbial Genomes
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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