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Taxonomy browser (Coffea arabica)

Coffea arabica

Taxonomy ID: 13443 (for references in articles please use NCBI:txid13443)
Scientific name: Coffea arabica L.
Genbank common name: coffee
Inherited blast name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
common name: arabica coffee
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
   Entrez records   
Database name Direct links
Nucleotide 1,273
Nucleotide EST 174,275
Nucleotide GSS 3,875
Protein 880
Genome 1
Popset 36
GEO Datasets 148
PubMed Central 849
Gene 140
SRA Experiments 363
Protein Clusters 77
Identical Protein Groups 470
Bio Project 29
Bio Sample 182
Assembly 1
Clone DB 15
Probe 134
PubChem BioAssay 68
Taxonomy 1

Comments and References:

Nota BeneGRIN taxonomy
Name verified on date of entry into database in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.

Nota BeneTROPICOS (Jan 09, 2015)
Name accessed on 9 January 2015, in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/

Nota BeneWorld Checklist of Rubiaceae (Mar 13, 2017)
Name accessed on 13 March 2017 in: Govaerts, R., Ruhsam, M., Andersson, L., Robbrecht, E., Bridson, D., Davis, A., Schanzer, I. & Sonke, B. World Checklist of Rubiaceae. The Board of Trustees of the Royal Botanic Gardens, Kew. Published on the Internet; http://www.kew.org/wcsp/rubiaceae/


Genome Information

Go to NCBI genomic BLAST page for Coffea arabica

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Coffea arabica taxonomy taxonomy/phylogenetic Arctos Specimen Database
Coffea arabica L. taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Coffea arabica L. taxonomy/phylogenetic Integrated Taxonomic Information System
Coffea arabica taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Coffea arabica taxonomy/phylogenetic The International Plant Names Index
Coffea arabica L. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Coffea arabica organism-specific WebScipio - eukaryotic gene identification
diArk: Coffea arabica organism-specific diArk - a resource for eukaryotic genome research
Coffea arabica taxonomy/phylogenetic electronic Plant Information Centre
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


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