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Taxonomy browser (Microcoleus sp. PCC 7113)

Microcoleus sp. PCC 7113

Taxonomy ID: 1173027 (for references in articles please use NCBI:txid1173027)
current name
Microcoleus sp. PCC 7113
NCBI BLAST name: cyanobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic genbank synonym
Allocoleopsis franciscanus PCC 7113
heterotypic synonym
Oscillatoria sp. Mc
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Cyanobacteria/Melainabacteria group; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleaceae; Microcoleus; unclassified Microcoleus
   Entrez records   
Database name Direct links
Nucleotide 20
Protein 12,755
Genome 1
Gene 6,822
SRA Experiments 1
Protein Clusters 4,127
Identical Protein Groups 7,552
Bio Project 2
Bio Sample 2
Bio Systems 205
Assembly 1
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
PCC 7113
PCC reference strain for "Microcoleus" lacustris (Rippka R & Herdman H, 1992). Proposed type strain of Allocoleopsis franciscanus (Walter JM et al., 2017).
Rippka R & Herdman H (1992)
Rippka, R., and Herdmann, H.: Pasteur Culture Collection of Cyanobacterial Strains in Axenic Culture. Cyanobacteria Catalogue & Taxonomic Handbook. Vol. I. Catalogue of Strains 1992/1993. Paris: Institut Pasteur, 1992. [No PubMed record available.]
Shih PM et al. (2013)
Shih, P.M., Wu, D., Latifi, A., Axen, S.D., Fewer, D.P., Talla, E., Calteau, A., Cai, F., Tandeau de Marsac, N., Rippka, R., Herdman, M., Sivonen, K., Coursin, T., Laurent, T., Goodwin, L., Nolan, M., Davenport, K.W., Han, C.S., Rubin, E.M., Eisen, J.A., Woyke, T., Gugger, M., and Kerfeld, C.A. "Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing." Proc. Natl. Acad. Sci. USA (2013) 110:1053-1058.
Walter JM et al. (2017b)
Walter, J.M., Coutinho, F.H., Dutilh, B.E., Swings, J., Thompson, F.L., and Thompson, C.C. "Ecogenomics and taxonomy of Cyanobacteria phylum." Front. Microbiol. (2017) 8:2132.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Microcoleus sp. PCC 7113 PCC 7113 organism-specific BioCyc
GOLD: Go0006636 organism-specific Genomes On Line Database
2509276031: Microcoleus sp. PCC 7113 organism-specific Integrated Microbial Genomes
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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