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2IY0: 
SENP1 (mutant) SUMO1 RanGAP
Biological unit 1: trimeric
Source organism: Homo sapiens
Number of proteins:
3 (RAN GTPASE-ACTIVATING PROTEIN 1, SENTRIN-SPECIF... ▼)
Protein molecule
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 SENTRIN-SPECIFIC PROTEASE 1
BB -Click to explore this molecule neighbors
 SMALL UBIQUITIN-RELATED MODIFIER 1
CC -Click to explore this molecule neighbors
 RAN GTPASE-ACTIVATING PROTEIN 1
Similar Structures (2228)help
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Showing 1 to 10 out of 2228 selected structures help
      PDB ID Description Taxonomy▲▼ Aligned Protein▲▼ RMSD▲▼ Aligned Residues▲▼ Sequence Identity▲▼
1
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Partial
 2IY1
SENP1 (mutant) full length SUMO1
Homo sapiens
 2 0.48Å 302 100%
2
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Partial
 2IYD
SENP1 covalent complex with SUMO-2
Homo sapiens
 2 1.09Å 302 88%
3
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Partial
 2CKH
SENP1-SUMO2 complex
Homo sapiens
 2 1.13Å 301 87%
4
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Partial
 6NNQ
Non-covalent structure of SENP1 in complex with SUMO2
Homo sapiens
 2 0.88Å 300 87%
5
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Partial
 2IO2
Crystal structure of human Senp2 in complex with RanGAP1-SUMO-1
Homo sapiens
 2 1.14Å 300 69%
6
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Partial
 1TGZ
Structure of human Senp2 in complex with SUMO-1
Homo sapiens
 2 0.89Å 299 70%
7
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Partial
 2IO1
Crystal structure of human Senp2 in complex with preSUMO-3
Homo sapiens
 2 1.11Å 299 58%
8
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Partial
 2IO0
Crystal structure of human Senp2 in complex with preSUMO-2
Homo sapiens
 2 1.34Å 299 57%
9
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Partial
 3ZO5
Structure of SENP2-Loop1 in complex with preSUMO-2
Homo sapiens
 2 1.37Å 298 58%
10
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Partial
 2IO3
Crystal structure of human Senp2 in complex with RanGAP1-SUMO-2
Homo sapiens
 2 1.24Å 296 58%
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{"1":"SENTRIN-SPECIFIC PROTEASE 1","2":"SMALL UBIQUITIN-RELATED MODIFIER 1","3":"RAN GTPASE-ACTIVATING PROTEIN 1"}
Citing VAST
Gibrat JF, Madej T, Bryant SH. "Surprising similarities in structure comparison.", Curr Opin Struct Biol.1996 Jun;6(3):377-85
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. "MMDB and VAST+: tracking structural similarities between macromolecular complexes." Nucl. Acids Res. 2014 Jan;42(Database issue):D297-303
Thomas Madej, Aron Marchler-Bauer, Christopher Lanczycki, Dachuan Zhang, Stephen H Bryant "Biological Assembly Comparison With VAST" Methods Mol. Biol. 2020(2112):175-186
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?Original VAST
Original VAST finds structures that are similar to individual protein molecules, or individual 3D domains, in your query structure. Select a protein molecule ("chain") or 3D domain of interest from the table below to view a list of other proteins or domains that have a similar 3D shape. In contrast to VAST+, which focuses on the default biological unit, Original VAST lists all protein molecules in the asymmetric unit of the query structure.