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7CWL: 
SARS-CoV-2 spike protein and P17 fab complex with one RBD in close state
Biological unit 1: nonameric
Source organism: Severe acute respiratory syndrome coronavirus 2, ▼
Taxonomy
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Taxonomy Molecule
Severe acute respiratory syndrome coronavirus 2 A, B, C
Homo sapiens G, H, I, L, J, K
Number of proteins:
9 (Fab P17 heavy chain, Fab P17 light chain, Spike... ▼)
Protein molecule
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AA -Click to explore this molecule neighborsBB -Click to explore this molecule neighborsCC -Click to explore this molecule neighbors
 Spike glycoprotein
GG -Click to explore this molecule neighborsHH -Click to explore this molecule neighborsII -Click to explore this molecule neighbors
 Fab P17 heavy chain
LL -Click to explore this molecule neighborsJJ -Click to explore this molecule neighborsKK -Click to explore this molecule neighbors
 Fab P17 light chain
Number of chemicals:
27 (2-acetamido-2-deoxy-beta-D-glucopyranose (27) ▼)
Chemical
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2-acetamido-2-deoxy-beta-D-glucopyranose (27)
Similar Structures (432)help
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Showing 1 to 10 out of 432 selected structures help
      PDB ID Description Taxonomy▲▼ Aligned Protein▲▼ RMSD▲▼ Aligned Residues▲▼ Sequence Identity▲▼
1
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Partial
 7KQB
SARS-CoV-2 spike glycoprotein:Fab 5A6 complex I
Others
 7 2.77Å 3596 91%
2
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Partial
 7K8T
Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, C002 (State 2)
Others
 7 3.32Å 3249 96%
3
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Partial
 7L58
Cryo-EM structure of the SARS-CoV-2 spike glycoprotein bound to Fab H4
Others
 5 6.27Å 3179 95%
4
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Partial
 7K8U
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C002 (state 1)
Others
 5 3.12Å 3161 95%
5
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Partial
 7M6I
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, BG1-24
Others
 5 2.58Å 3010 96%
6
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Partial
 7CWS
SARS-CoV-2 Spike Proteins Trimer in Complex with FC05 and H014 Fabs Cocktail
Others
 3 3.19Å 2999 95%
7
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Partial
 7NDD
EM structure of SARS-CoV-2 Spike glycoprotein (one RBD up) in complex with COVOX-159
Others
 3 2.75Å 2980 98%
8
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Partial
 7LXZ
SARS-CoV-2 S/S2M11/S2L28 Global Refinement
Others
 5 5.29Å 2979 94%
9
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Partial
 7K8Y
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C121 (State 2)
Others
 3 2.54Å 2973 98%
10
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Partial
 7NTC
Trimeric SARS-CoV-2 spike ectodomain bound to P008_056 Fab
Others
 3 4.14Å 2968 75%
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{"1":"Spike glycoprotein","2":"Spike glycoprotein","3":"Spike glycoprotein","4":"Fab P17 heavy chain","5":"Fab P17 heavy chain","6":"Fab P17 heavy chain","7":"Fab P17 light chain","8":"Fab P17 light chain","9":"Fab P17 light chain"}
Citing VAST
Gibrat JF, Madej T, Bryant SH. "Surprising similarities in structure comparison.", Curr Opin Struct Biol.1996 Jun;6(3):377-85
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. "MMDB and VAST+: tracking structural similarities between macromolecular complexes." Nucl. Acids Res. 2014 Jan;42(Database issue):D297-303
Thomas Madej, Aron Marchler-Bauer, Christopher Lanczycki, Dachuan Zhang, Stephen H Bryant "Biological Assembly Comparison With VAST" Methods Mol. Biol. 2020(2112):175-186
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?Original VAST
Original VAST finds structures that are similar to individual protein molecules, or individual 3D domains, in your query structure. Select a protein molecule ("chain") or 3D domain of interest from the table below to view a list of other proteins or domains that have a similar 3D shape. In contrast to VAST+, which focuses on the default biological unit, Original VAST lists all protein molecules in the asymmetric unit of the query structure.