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4V11
Structure of Synaptotagmin-1 with SV2A peptide phosphorylated at Thr84
Biological unit 1: dimeric
Source organism: Homo sapiens
Number of proteins:
2 (SYNAPTIC VESICLE GLYCOPROTEIN 2A, SYNAPTOTAGMIN-1 )
Protein molecule
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SYNAPTOTAGMIN-1
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SYNAPTIC VESICLE GLYCOPROTEIN 2A
Number of chemicals:
4 (CALCIUM ION (3),GLYCEROL )
Chemical
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Similar Structures (311)help
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Showing 1 to 10 out of 311 selected structures help
      PDB ID Description Taxonomy Aligned Protein RMSD Aligned Residues Sequence Identity
1
Expand row
Partial
5VFG
Synaptotagmin 1 C2B domain, lead-bound (high occupancy)
Mus musculus
1 0.57Å 150 99%
2
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Partial
5VFF
Synaptotagmin 1 C2B domain, lead-bound (low occupancy)
Mus musculus
1 0.57Å 148 99%
3
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Partial
5CCH
Structure of the Ca2+-bound synaptotagmin-1 SNARE complex (short unit cell form)
Rattus norvegicus
1 0.98Å 148 100%
4
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Partial
2LHA
Solution structure of C2B with IP6
Homo sapiens
1 2.35Å 148 100%
5
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Partial
5T0S
Synaptotagmin 1 C2B domain, cadmium-bound
Mus musculus
1 0.63Å 147 100%
6
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Partial
2R83
Crystal structure analysis of human synaptotagmin 1 C2A-C2B
Homo sapiens
1 0.63Å 147 100%
7
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Partial
1TJX
Crystallographic Identification of Ca2+ Coordination Sites in Synaptotagmin I C2B Domain
Rattus norvegicus
1 0.72Å 147 100%
8
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Partial
1UOW
Calcium binding domain C2B
Rattus norvegicus
1 0.72Å 147 100%
9
Expand row
Partial
1UOV
Calcium binding domain C2B
Rattus norvegicus
1 0.75Å 147 100%
10
Expand row
Partial
2YOA
Synaptotagmin-1 C2B domain with phosphoserine
Rattus norvegicus
1 0.76Å 147 100%
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{"1":"SYNAPTOTAGMIN-1","2":"SYNAPTIC VESICLE GLYCOPROTEIN 2A"}
Citing VAST
Thomas Madej, Aron Marchler-Bauer, Christopher Lanczycki, Dachuan Zhang, Stephen H Bryant "Biological Assembly Comparison With VAST" Methods Mol. Biol. 2020(2112):175-186
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?Original VAST
Original VAST finds structures that are similar to individual protein molecules, or individual 3D domains, in your query structure. Select a protein molecule ("chain") or 3D domain of interest from the table below to view a list of other proteins or domains that have a similar 3D shape. In contrast to VAST+, which focuses on the default biological unit, Original VAST lists all protein molecules in the asymmetric unit of the query structure.