9JA1: The RNA polymerase II elongation complex from Saccharomyces cerevisiae

PDB ID: 9JA1Download
MMDB ID: 251992
PDB Deposition Date: 2024/8/23
Updated in MMDB: 2024/12
Experimental Method:
electron microscopy
Resolution: 2.98  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 9JA1: 14-meric; determined by author
Molecular Components in 9JA1
Label Count Molecule
Proteins (11 molecules)
1
DNA-directed RNA Polymerase II Subunit Rpb1
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb2
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb3
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc1
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc2
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc5
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb11
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc4
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb4
Molecule annotation
1
DNA-directed RNA Polymerase II Subunit Rpb7
Molecule annotation
Nucleotides(3 molecules)
1
RNA (5'-r(p*ap*up*cp*gp*ap*gp*ap*gp*g)-3')
Molecule annotation
1
DNA (5'-d(p*gp*cp*tp*cp*cp*tp*tp*cp*tp*cp*cp*cp*ap*tp*cp*cp*tp*cp*tp*cp*gp*ap*t)-3')
Molecule annotation
1
DNA (5'-d(p*tp*gp*gp*gp*ap*gp*ap*ap*gp*gp*ap*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
6
ZINC IONZINC ION
2
2
MAGNESIUM IONMAGNESIUM ION
3
1
ADENOSINE-5'-TRIPHOSPHATEADENOSINE-5'-TRIPHOSPHATE
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Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303