9GD3: Structure of a mononucleosome bound by one copy of Chd1 with the DBD on the exit-side DNA

PDB ID: 9GD3Download
MMDB ID: 252580
PDB Deposition Date: 2024/8/4
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 3  Å
Source Organism:
Saccharomyces cerevisiae S288C▼
Similar Structures:
Biological Unit for 9GD3: dodecameric; determined by author and by software
Molecular Components in 9GD3
Label Count Molecule
Proteins (10 molecules)
2
Histone H3.2
Molecule annotation
2
Histone H4
Molecule annotation
2
Histone H2A Type 1
Molecule annotation
2
Histone H2B 1.1
Molecule annotation
2
Chromo Domain-containing Protein 1
Molecule annotation
Nucleotides(2 molecules)
1
DNA (231-mer)
Molecule annotation
1
DNA (231-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
1
ADENOSINE-5'-DIPHOSPHATEADENOSINE-5'-DIPHOSPHATE
2
1
BERYLLIUM TRIFLUORIDE IONBERYLLIUM TRIFLUORIDE ION
3
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303