9FZ6: A 2.58A crystal structure of S. aureus DNA gyrase and DNA with metals identified through anomalous scattering

PDB ID: 9FZ6Download
MMDB ID: 254002
PDB Deposition Date: 2024/7/4
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 2.58  Å
Source Organism:
DNA molecule▼
Similar Structures:
Biological Unit for 9FZ6: octameric; determined by author and by software (PISA)
Molecular Components in 9FZ6
Label Count Molecule
Proteins (4 molecules)
2
DNA Gyrase Subunit a
Molecule annotation
2
DNA Gyrase Subunit B
Molecule annotation
Nucleotides(4 molecules)
2
DNA (5'-d(*ap*gp*cp*cp*gp*tp*ap*g)-3')
Molecule annotation
2
DNA (5'-d(*ap*gp*tp*ap*cp*cp*tp*ap*cp*gp*gp*cp*t)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (13 molecules)
1
7
GLYCEROLGLYCEROL
2
5
MANGANESE (II) IONMANGANESE (II) ION
3
1
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303