9EVX: cryoEM structure of Photosystem II averaged across S2-S3 states at 1.71 Angstrom resolution

PDB ID: 9EVXDownload
MMDB ID: 248375
PDB Deposition Date: 2024/4/2
Updated in MMDB: 2024/07
Experimental Method:
electron microscopy
Resolution: 1.71  Å
Source Organism:
Similar Structures:
Biological Unit for 9EVX: 38-meric; determined by author and by software
Molecular Components in 9EVX
Label Count Molecule
Proteins (38 molecules)
2
Photosystem II Protein D1 1
Molecule annotation
2
Photosystem II Cp47 Reaction Center Protein
Molecule annotation
2
Photosystem II Cp43 Reaction Center Protein
Molecule annotation
2
Photosystem II D2 Protein
Molecule annotation
2
Cytochrome B559 Subunit Alpha
Molecule annotation
2
Cytochrome B559 Subunit Beta
Molecule annotation
2
Photosystem II Reaction Center Protein H
Molecule annotation
2
Photosystem II Reaction Center Protein I
Molecule annotation
2
Photosystem II Reaction Center Protein J
Molecule annotation
2
Photosystem II Reaction Center Protein K
Molecule annotation
2
Photosystem II Reaction Center Protein L
Molecule annotation
2
Photosystem II Reaction Center Protein M
Molecule annotation
2
Photosystem II Manganese-stabilizing Polypeptide
Molecule annotation
2
Photosystem II Reaction Center Protein T
Molecule annotation
2
Photosystem II 12 KDA Extrinsic Protein
Molecule annotation
2
Cytochrome C-550
Molecule annotation
2
Photosystem II Reaction Center X Protein
Molecule annotation
2
Photosystem II Reaction Center Protein Ycf12
Molecule annotation
2
Photosystem II Reaction Center Protein Z
Molecule annotation
Chemicals and Non-standard biopolymers (212 molecules)
1
2
FE (II) IONFE (II) ION
2
4
CHLORIDE IONCHLORIDE ION
3
70
CHLOROPHYLL ACHLOROPHYLL A
4
22
BETA-CAROTENEBETA-CAROTENE
5
4
2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE
6
42
STEARIC ACIDSTEARIC ACID
7
14
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
8
8
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
9
10
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DIGALACTOSYL DIACYL GLYCEROL (DGDG)
10
2
CA-MN4-O5 CLUSTERCA-MN4-O5 CLUSTER
11
4
PHEOPHYTIN APHEOPHYTIN A
12
10
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
13
14
DODECYL-BETA-D-MALTOSIDEDODECYL-BETA-D-MALTOSIDE
14
2
BICARBONATE IONBICARBONATE ION
15
2
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
16
2
HEME CHEME C
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303