9ESH: Structure of a B-state intermediate committed to discard (Bd-I state)

PDB ID: 9ESHDownload
MMDB ID: 257322
PDB Deposition Date: 2024/3/26
Updated in MMDB: 2024/12
Experimental Method:
electron microscopy
Resolution: 3.2  Å
Source Organism:
Similar Structures:
Biological Unit for 9ESH: 39-meric; determined by author and by software
Molecular Components in 9ESH
Label Count Molecule
Proteins (35 molecules)
1
Pre-mrna-splicing Factor Spp42
(Gene symbol: spp42)
Molecule annotation
1
Pre-mrna-splicing Factor Cwf10
(Gene symbol: cwf10)
Molecule annotation
1
Pre-mrna-splicing Factor Cwf17
(Gene symbol: spf38)
Molecule annotation
1
Small Nuclear Ribonucleoprotein SM D3
(Gene symbol: smd3)
Molecule annotation
1
Small Nuclear Ribonucleoprotein-associated Protein B
(Gene symbol: smb1)
Molecule annotation
1
Small Nuclear Ribonucleoprotein SM D1
(Gene symbol: smd1)
Molecule annotation
1
Small Nuclear Ribonucleoprotein SM D2
(Gene symbol: smd2)
Molecule annotation
1
Small Nuclear Ribonucleoprotein E
(Gene symbol: sme1)
Molecule annotation
1
Small Nuclear Ribonucleoprotein F
(Gene symbol: smf1)
Molecule annotation
1
Small Nuclear Ribonucleoprotein G
(Gene symbol: smg1)
Molecule annotation
1
Pre-mrna-splicing Factor Prp5
(Gene symbol: prp5)
Molecule annotation
1
Pre-mrna-processing Protein 45
(Gene symbol: prp45)
Molecule annotation
1
Pre-mrna-splicing Factor Cwf5
(Gene symbol: cwf5)
Molecule annotation
1
Pre-mrna-splicing Factor Cwf11
(Gene symbol: cwf11)
Molecule annotation
1
Pre-mrna-splicing Factor Cwf14
(Gene symbol: cwf14)
Molecule annotation
1
Pre-mrna-splicing Factor Cwf2
(Gene symbol: cwf2)
Molecule annotation
1
Pre-mrna-splicing Factor Cwf15
(Gene symbol: cwf15)
Molecule annotation
1
Pre-mrna-splicing Factor Cwf4
(Gene symbol: cwf4)
Molecule annotation
4
Pre-mrna-processing Factor 19
(Gene symbol: prp19)
Molecule annotation
1
Pre-mrna-splicing Factor Cdc5
(Gene symbol: cdc5)
Molecule annotation
1
Pre-mrna-splicing Factor Cwf3
(Gene symbol: cwf3)
Molecule annotation
1
Pre-mrna-splicing Factor Syf2
(Gene symbol: syf2)
Molecule annotation
1
Pre-mrna-splicing Factor Cwf7
(Gene symbol: cwf7)
Molecule annotation
1
Pre-mrna-processing Factor 17
(Gene symbol: prp17)
Molecule annotation
1
Pre-mrna-splicing Factor Cwf21
(Gene symbol: cwf21)
Molecule annotation
1
Pre-mrna-splicing Factor Cwf22
(Gene symbol: cwf22)
Molecule annotation
1
Peptidyl-prolyl Cis-trans Isomerase Ppi1
(Gene symbol: cyp1)
Molecule annotation
1
Unk1
Molecule annotation
1
G-patch Domain-containing Protein C1486.03
(Gene symbol: SPAC1486.03c)
Molecule annotation
1
Unk2
Molecule annotation
1
Uncharacterized Protein C20h4.06c
(Gene symbol: SPAC20H4.06c)
Molecule annotation
1
Putative Pre-mrna-splicing Factor Atp-dependent RNA Helicase C20h4.09
(Gene symbol: SPAC20H4.09)
Molecule annotation
Nucleotides(4 molecules)
1
Pre-mrna
Molecule annotation
1
U2snrna
Molecule annotation
1
U5snrna
Molecule annotation
1
U6snrna
Molecule annotation
Chemicals and Non-standard biopolymers (13 molecules)
1
4
MAGNESIUM IONMAGNESIUM ION
2
1
POTASSIUM IONPOTASSIUM ION
3
1
INOSITOL HEXAKISPHOSPHATEINOSITOL HEXAKISPHOSPHATE
4
1
GUANOSINE-5'-TRIPHOSPHATEGUANOSINE-5'-TRIPHOSPHATE
5
6
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303