9EMI: KOD-H4 DNA polymerase mutant in a ternary complex containing six HNA nucleotides and a non-hydrolyzable triphosphate

PDB ID: 9EMIDownload
MMDB ID: 255024
PDB Deposition Date: 2024/3/8
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 2.27  Å
Source Organism:
Thermococcus kodakarensis KOD1▼
Similar Structures:
Biological Unit for 9EMI: trimeric; determined by author
Molecular Components in 9EMI
Label Count Molecule
Protein (1 molecule)
1
DNA Polymerase
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*gp*ap*cp*cp*ap*cp*gp*gp*cp*cp*ap*cp*a*(xg4))-3')
Molecule annotation
1
DNA (5'-d(*(6ha)p*(6ha)p*(6hc)p*(6ht)p*(6hg)p*(6ht)p*gp*gp*cp*cp*gp*tp*gp*gp*tp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (6 molecules)
1
3
1,2-ETHANEDIOL1,2-ETHANEDIOL
2
2
MAGNESIUM IONMAGNESIUM ION
3
1
2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]guanosine
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303