9DQW: Crystal Structure of UDP-N-acetylmuramoylalanine--D-glutamate ligase (MurD) from E. coli in complex with UMA and AMP-PNP

PDB ID: 9DQWDownload
MMDB ID: 253392
PDB Deposition Date: 2024/9/24
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 1.45  Å
Source Organism:
Similar Structures:
Biological Unit for 9DQW: monomeric; determined by author
Molecular Components in 9DQW
Label Count Molecule
Protein (1 molecule)
1
Udp-n-acetylmuramoylalanine--d-glutamate Ligase
Molecule annotation
Chemicals and Non-standard biopolymers (11 molecules)
1
1
MAGNESIUM IONMAGNESIUM ION
2
1
URIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINEURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE
3
3
CHLORIDE IONCHLORIDE ION
4
1
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTERPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
5
1
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
6
2
GLYCEROLGLYCEROL
7
2
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303