9DP2: APE1 N174A Product Complex with Abasic DNA

PDB ID: 9DP2Download
MMDB ID: 253389
PDB Deposition Date: 2024/9/20
Updated in MMDB: 2025/12
Experimental Method:
x-ray diffraction
Resolution: 1.99  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 9DP2: tetrameric; determined by author and by software (PISA)
Molecular Components in 9DP2
Label Count Molecule
Protein (1 molecule)
1
DNA Repair Nuclease/redox Regulator Apex1, Mitochondrial
Molecule annotation
Nucleotides(3 molecules)
1
DNA (5'-d(p*(3dr)p*cp*gp*ap*cp*gp*gp*ap*tp*cp*c)-3')
Molecule annotation
1
DNA (5'-d(*gp*cp*tp*gp*ap*tp*gp*cp*gp*c)-3')
Molecule annotation
1
DNA (5'-d(*gp*gp*ap*tp*cp*cp*gp*tp*cp*gp*gp*gp*cp*gp*cp*ap*tp*cp*ap*gp*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
1
MANGANESE (II) IONMANGANESE (II) ION
2
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303