9DG3: ncPRC1RYBP Delta-linker mutant bound to singly modified H2AK119Ub nucleosome

PDB ID: 9DG3Download
MMDB ID: 255352
PDB Deposition Date: 2024/9/1
Updated in MMDB: 2024/12
Experimental Method:
electron microscopy
Resolution: 3.46  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 9DG3: dodecameric; determined by author and by software
Molecular Components in 9DG3
Label Count Molecule
Proteins (10 molecules)
2
Histone H3.2
Molecule annotation
2
Histone H4
Molecule annotation
1
Histone H2A Type 1
Molecule annotation
2
Histone H2B 1.1
Molecule annotation
1
Histone H2A Type 1
Molecule annotation
1
Ring1 and Yy1-binding Protein
Molecule annotation
1
Ubiquitin
Molecule annotation
Nucleotides(2 molecules)
1
DNA (187-mer)
Molecule annotation
1
DNA (187-mer)
Molecule annotation
Chemical and Non-standard biopolymers (1 molecule)
1
1
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303