9DF0: PDCoV S RBD bound to PD41 Fab (local refinement)

PDB ID: 9DF0Download
MMDB ID: 255016
PDB Deposition Date: 2024/8/29
Updated in MMDB: 2024/12
Experimental Method:
electron microscopy
Resolution: 2.8  Å
Source Organism:
Porcine deltacoronavirus▼
Similar Structures:
Biological Unit for 9DF0: trimeric; determined by author
Molecular Components in 9DF0
Label Count Molecule
Proteins (3 molecules)
1
Spike Glycoprotein
Molecule annotation
1
Pd41 FAB Variable Heavy-chain
Molecule annotation
1
Pd41 FAB Variable Light-chain
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
3
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
beta-D-mannopyranosebeta-D-mannopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303