9DBY: ncPRC1RYBP bound to singly modified H2AK119Ub nucleosome

PDB ID: 9DBYDownload
MMDB ID: 255347
PDB Deposition Date: 2024/8/24
Updated in MMDB: 2024/12
Experimental Method:
electron microscopy
Resolution: 2.8  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 9DBY: 14-meric; determined by author and by software
Molecular Components in 9DBY
Label Count Molecule
Proteins (12 molecules)
2
Histone H3.2
Molecule annotation
2
Histone H4
Molecule annotation
1
Histone H2A Type 1
Molecule annotation
2
Histone H2B 1.1
Molecule annotation
1
Histone H2A Type 1
Molecule annotation
1
Polycomb Complex Protein Bmi-1
Molecule annotation
1
E3 Ubiquitin-protein Ligase Ring2
Molecule annotation
1
Ring1 and Yy1-binding Protein
Molecule annotation
1
Ubiquitin
Molecule annotation
Nucleotides(2 molecules)
1
DNA (187-mer)
Molecule annotation
1
DNA (187-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (5 molecules)
1
5
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303