9DB2: Class Ia ribonucleotide reductase with mechanism-based inhibitor N3CDP

PDB ID: 9DB2Download
MMDB ID: 254749
PDB Deposition Date: 2024/8/23
Updated in MMDB: 2024/11
Experimental Method:
electron microscopy
Resolution: 2.6  Å
Source Organism:
Similar Structures:
Biological Unit for 9DB2: tetrameric; determined by author and by software
Molecular Components in 9DB2
Label Count Molecule
Proteins (4 molecules)
2
Ribonucleoside-diphosphate Reductase 1 Subunit Alpha
Molecule annotation
2
Ribonucleoside-diphosphate Reductase 1 Subunit Beta
Molecule annotation
Chemicals and Non-standard biopolymers (14 molecules)
1
2
2'-DEOXYADENOSINE 5'-TRIPHOSPHATE2'-DEOXYADENOSINE 5'-TRIPHOSPHATE
2
4
MAGNESIUM IONMAGNESIUM ION
3
4
ADENOSINE-5'-TRIPHOSPHATEADENOSINE-5'-TRIPHOSPHATE
4
1
UNKNOWN LIGANDUNKNOWN LIGAND
5
1
MAGNESIUM IONMAGNESIUM ION
6
2
MU-OXO-DIIRONMU-OXO-DIIRON
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303