9C5B: AP-3 bound to myristoylated Arf1 (Q71L) and LAMPI on a lipid nanodisc; combined map

PDB ID: 9C5BDownload
MMDB ID: 257010
PDB Deposition Date: 2024/6/6
Updated in MMDB: 2024/12
Experimental Method:
electron microscopy
Resolution: 4.5  Å
Source Organism:
Similar Structures:
Biological Unit for 9C5B: heptameric; determined by author
Molecular Components in 9C5B
Label Count Molecule
Proteins (7 molecules)
2
Adp-ribosylation Factor 1
(Gene symbol: ARF1)
Molecule annotation
1
Ap-3 Complex Subunit Delta-1
(Gene symbol: AP3D1)
Molecule annotation
1
Ap-3 Complex Subunit Mu-1
(Gene symbol: AP3M1)
Molecule annotation
1
Ap-3 Complex Subunit Sigma-1
(Gene symbol: AP3S1)
Molecule annotation
1
Lysosome-associated Membrane Glycoprotein 1
(Gene symbol: LAMP1)
Molecule annotation
1
Ap-3 Complex Subunit Beta-1
(Gene symbol: AP3B1)
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
2
MAGNESIUM IONMAGNESIUM ION
2
2
GUANOSINE-5'-TRIPHOSPHATEGUANOSINE-5'-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303