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Biotechnology Information

9BRD: Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3

PDB ID:

MMDB ID:

249042

PDB Deposition Date:

2024/5/11

Updated in MMDB:

2024/07

Experimental Method:

electron microscopy

Resolution:

3.5 Å

Source Organism:

Legionella pneumophila subsp. pneumophila str. Philadelphia 1▼

Taxonomy	Molecule
Legionella pneumophila subsp. pneumophila str. Philadelphia 1	Q, R, S
Rattus norvegicus	A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, T, U, a, b, d, e, f, g, h, i, j, k, l, m, n, o, p

Similar Structures:

Biological Unit for 9BRD: 36-meric; determined by author

Molecular Components in 9BRD
Label	Count	Molecule
Proteins (36 molecules)
A B C	3	H(+)-transporting Two-sector Atpase
D E F	3	V-type Proton Atpase Subunit B, Brain Isoform
G	1	V-type Proton Atpase Subunit C 1
H	1	Atpase H+-transporting V1 Subunit D
I J K	3	V-type Proton Atpase Subunit E 1
L	1	V-type Proton Atpase Subunit F
M N O	3	V-type Proton Atpase Subunit G
P	1	V-type Proton Atpase Subunit S1
Q R S	3	Type IV Secretion Protein DOT
T	1	V-type Proton Atpase Subunit H
U	1	Synaptophysin
a	1	V-type Proton Atpase 116 KDA Subunit a 1
b	1	Atpase, H+ Transporting, V0 Subunit B (Predicted), Isoform Cra_a
d	1	V-type Proton Atpase Subunit
e	1	V-type Proton Atpase Subunit E 2
f	1	Rnasek Protein
g h i j k l m n o	9	V-type Proton Atpase 16 KDA Proteolipid Subunit
p	1	Renin Receptor
Chemicals and Non-standard biopolymers (75 molecules)
1	19	2-acetamido-2-deoxy-beta-D-glucopyranose
2	1	beta-D-mannopyranose
3	5	alpha-D-mannopyranose
4	3	alpha-D-glucopyranose
5	1	ADENOSINE-5'-DIPHOSPHATE
6	5	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
7	9	PHOSPHATIDYLETHANOLAMINE
8	1	methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate
9	1	(7R)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOSAN-1-AMINIUM 4-OXIDE
10	30	CHOLESTEROL

* Click molecule labels to explore molecular sequence information.

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