9BKD: The structure of human Pdcd4 bound to the 40S small ribosomal subunit

PDB ID: 9BKDDownload
MMDB ID: 251916
PDB Deposition Date: 2024/4/27
Updated in MMDB: 2024/09
Experimental Method:
electron microscopy
Resolution: 2.6  Å
Source Organism:
Similar Structures:
Biological Unit for 9BKD: 36-meric; determined by author and by software
Molecular Components in 9BKD
Label Count Molecule
Proteins (35 molecules)
1
Small Ribosomal Subunit Protein ES6
(Gene symbol: RPS6)
Molecule annotation
1
Small Ribosomal Subunit Protein ES7
(Gene symbol: RPS7)
Molecule annotation
1
40S Ribosomal Protein S27
(Gene symbol: RPS27)
Molecule annotation
1
40S Ribosomal Protein S21
(Gene symbol: RPS21)
Molecule annotation
1
40S Ribosomal Protein S2
(Gene symbol: RPS2)
Molecule annotation
1
40S Ribosomal Protein S3A
(Gene symbol: RPS3A)
Molecule annotation
1
Small Ribosomal Subunit Protein US2
(Gene symbol: RPSA)
Molecule annotation
1
40S Ribosomal Protein S26
(Gene symbol: RPS26)
Molecule annotation
1
40S Ribosomal Protein S14
(Gene symbol: RPS14)
Molecule annotation
1
40S Ribosomal Protein S13
(Gene symbol: RPS13)
Molecule annotation
1
60S Ribosomal Protein L41
(Gene symbol: RPL41)
Molecule annotation
1
Small Ribosomal Subunit Protein Us17
(Gene symbol: RPS11)
Molecule annotation
1
Small Ribosomal Subunit Protein Es4, X Isoform
(Gene symbol: RPS4X)
Molecule annotation
1
Small Ribosomal Subunit Protein US4
(Gene symbol: RPS9)
Molecule annotation
1
Small Ribosomal Subunit Protein Us12
(Gene symbol: RPS23)
Molecule annotation
1
Small Ribosomal Subunit Protein Es30
(Gene symbol: FAU)
Molecule annotation
1
40S Ribosomal Protein S15a
(Gene symbol: RPS15A)
Molecule annotation
1
Small Ribosomal Subunit Protein ES8
(Gene symbol: RPS8)
Molecule annotation
1
Small Ribosomal Subunit Protein Es24
(Gene symbol: RPS24)
Molecule annotation
1
40S Ribosomal Protein S5
(Gene symbol: RPS5)
Molecule annotation
1
40S Ribosomal Protein S16
(Gene symbol: RPS16)
Molecule annotation
1
Small Ribosomal Subunit Protein US3
(Gene symbol: RPS3)
Molecule annotation
1
Small Ribosomal Subunit Protein Es10
(Gene symbol: RPS10)
Molecule annotation
1
40S Ribosomal Protein S15
(Gene symbol: RPS15)
Molecule annotation
1
Receptor of Activated Protein C Kinase 1
(Gene symbol: RACK1)
Molecule annotation
1
40S Ribosomal Protein S19
(Gene symbol: RPS19)
Molecule annotation
1
Small Ribosomal Subunit Protein Es25
(Gene symbol: RPS25)
Molecule annotation
1
Small Ribosomal Subunit Protein Us13
(Gene symbol: RPS18)
Molecule annotation
1
40S Ribosomal Protein S29
(Gene symbol: RPS29)
Molecule annotation
1
Ubiquitin-40s Ribosomal Protein S27a
(Gene symbol: RPS27A)
Molecule annotation
1
40S Ribosomal Protein S12
(Gene symbol: RPS12)
Molecule annotation
1
40S Ribosomal Protein S28
(Gene symbol: RPS28)
Molecule annotation
1
40S Ribosomal Protein S17
(Gene symbol: RPS17)
Molecule annotation
1
40S Ribosomal Protein S20
(Gene symbol: RPS20)
Molecule annotation
1
Programmed Cell Death Protein 4
(Gene symbol: PDCD4)
Molecule annotation
Nucleotide(1 molecule)
1
18S rRNA
Molecule annotation
Chemicals and Non-standard biopolymers (111 molecules)
1
3
ZINC IONZINC ION
2
19
POTASSIUM IONPOTASSIUM ION
3
88
MAGNESIUM IONMAGNESIUM ION
4
1
SPERMIDINESPERMIDINE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303