9BER: Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab

PDB ID: 9BERDownload
MMDB ID: 250527
PDB Deposition Date: 2024/4/16
Updated in MMDB: 2024/08
Experimental Method:
electron microscopy
Resolution: 4.1  Å
Source Organism:
Human immunodeficiency virus 1▼
Similar Structures:
Biological Unit for 9BER: dodecameric; determined by author
Molecular Components in 9BER
Label Count Molecule
Proteins (12 molecules)
3
Envelope Glycoprotein Gp120
Molecule annotation
3
Envelope Glycoprotein Gp41
Molecule annotation
3
Pgt122 Heavy Chain
Molecule annotation
3
Pgt122 Light Chain
Molecule annotation
Chemicals and Non-standard biopolymers (100 molecules)
1
81
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
6
beta-D-mannopyranosebeta-D-mannopyranose
3
12
alpha-D-mannopyranosealpha-D-mannopyranose
4
1
SULFATE IONSULFATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303