8ZC5: SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with D1F6 Fab, focused refinement of RBD region

PDB ID: 8ZC5Download
MMDB ID: 247112
PDB Deposition Date: 2024/4/28
Updated in MMDB: 2025/07
Experimental Method:
electron microscopy
Resolution: 3.91  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 8ZC5: hexameric; determined by author
Molecular Components in 8ZC5
Label Count Molecule
Proteins (6 molecules)
2
Spike Protein S1
Molecule annotation
2
Light Chain of D1f6 FAB
Molecule annotation
2
Heavy Chain of D1f6 FAB
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
2
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303