8YLU: structure of phage T6 topoisomerase II central domain bound with DNA

PDB ID: 8YLUDownload
MMDB ID: 252745
PDB Deposition Date: 2024/3/6
Updated in MMDB: 2025/12
Experimental Method:
electron microscopy
Resolution: 2.8  Å
Source Organism:
Salmonella phage Chi▼
Similar Structures:
Biological Unit for 8YLU: hexameric; determined by author and by software
Molecular Components in 8YLU
Label Count Molecule
Proteins (4 molecules)
2
DNA Topoisomerase Medium Subunit
Molecule annotation
2
DNA Topoisomerase (Atp-hydrolyzing)
Molecule annotation
Nucleotides(2 molecules)
1
DNA(5'-d(p*tp*gp*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*tp*ap*tp*ap))
Molecule annotation
1
DNA (5'-d(p*tp*ap*tp*ap*tp*gp*tp*gp*tp*ap*tp*ap*tp*ap*tp*ap*cp*ap*cp*ap*cp*a)-3')
Molecule annotation
Chemical and Non-standard biopolymers (1 molecule)
1
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303