8YIN: Cryo-EM structure of Saccharomyces cerevisiae bc1 complex in YF23694-bound state

PDB ID: 8YINDownload
MMDB ID: 257266
PDB Deposition Date: 2024/2/29
Updated in MMDB: 2024/12
Experimental Method:
electron microscopy
Resolution: 2.74  Å
Source Organism:
Similar Structures:
Biological Unit for 8YIN: eicosameric; determined by author
Molecular Components in 8YIN
Label Count Molecule
Proteins (20 molecules)
2
Cor1 Isoform 1
Molecule annotation
2
Cytochrome B
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 2, Mitochondrial
Molecule annotation
2
Cytochrome C1, Heme Protein, Mitochondrial
Molecule annotation
2
Cytochrome B-c1 Complex Subunit Rieske, Mitochondrial
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 8
Molecule annotation
2
Qcr6 Isoform 1
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 7
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 9, Mitochondrial
Molecule annotation
2
Cytochrome B-c1 Complex Subunit 10, Mitochondrial
Molecule annotation
Chemicals and Non-standard biopolymers (19 molecules)
1
2
(1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate(1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate
2
2
(2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate(2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate
3
2
(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate
4
6
PROTOPORPHYRIN IX CONTAINING FEPROTOPORPHYRIN IX CONTAINING FE
5
1
(5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate(5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate
6
2
5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL
7
2
5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL
8
2
(2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate(2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303