8YFR: Cryo EM structure of Komagataella phaffii Rat1-Rai1 complex bound within the RNAPII cleft

PDB ID: 8YFRDownload
MMDB ID: 252744
PDB Deposition Date: 2024/2/25
Updated in MMDB: 2024/09
Experimental Method:
electron microscopy
Resolution: 3.4  Å
Source Organism:
Similar Structures:
Biological Unit for 8YFR: 14-meric; determined by author
Molecular Components in 8YFR
Label Count Molecule
Proteins (14 molecules)
1
DNA-directed RNA Polymerase Subunit
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Beta
Molecule annotation
1
RNA Polymerase II Third Largest Subunit B44, Part of Central Core
Molecule annotation
1
RNA Polymerase II Subunit B32
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc1
Molecule annotation
1
RNA Polymerase Subunit Abc23, Common to RNA Polymerases I, II, and III
Molecule annotation
1
RNA Polymerase II Subunit
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
Molecule annotation
1
DNA-directed RNA Polymerase Subunit
Molecule annotation
1
RNA Polymerase Subunit Abc10-beta, Common to RNA Polymerases I, II, and III
Molecule annotation
1
RNA Polymerase II Subunit B12.5
Molecule annotation
1
RNA Polymerase Subunit Abc10-alpha
Molecule annotation
1
5'-3' Exoribonuclease
Molecule annotation
1
Decapping Nuclease
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
1
8
ZINC IONZINC ION
2
1
MAGNESIUM IONMAGNESIUM ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303