8YDC: Crystal structure of a hammerhead ribozyme with pseudoknot

PDB ID: 8YDCDownload
MMDB ID: 251316
PDB Deposition Date: 2024/2/20
Updated in MMDB: 2024/08
Experimental Method:
x-ray diffraction
Resolution: 2.89  Å
Source Organism:
Biological Unit for 8YDC: dimeric; determined by author and by software
Molecular Components in 8YDC
Label Count Molecule
Nucleotide(1 molecule)
1
Ribozyme Strand
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
B
1
DNA/RNA (5'-R(*AP*CP*AP*UP*GP*UP*CP*U)-D(P*C)-R(P*UP*GP*GP*GP*A)-3')
1
1
GUANOSINE-5'-TRIPHOSPHATEGUANOSINE-5'-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303