8YB4: Pfr conformer of Arabidopsis thaliana phytochrome B in complex with phytochrome-interacting factor 6

PDB ID: 8YB4Download
MMDB ID: 253057
PDB Deposition Date: 2024/2/11
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 3.1  Å
Source Organism:
Similar Structures:
Biological Unit for 8YB4: trimeric; determined by author
Molecular Components in 8YB4
Label Count Molecule
Proteins (3 molecules)
2
Phytochrome B
(Gene symbol: PHYB)
Molecule annotation
1
Phytochrome-interacting Factor 6
(Gene symbol: PIL2)
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
2
3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303