8Y8B: Local structure of HCoV-HKU1C spike in complex with TMPRSS2 and glycan

PDB ID: 8Y8BDownload
MMDB ID: 249931
PDB Deposition Date: 2024/2/6
Updated in MMDB: 2024/09
Experimental Method:
electron microscopy
Resolution: 3.01  Å
Source Organism:
Human coronavirus HKU1 (isolate N5)▼
Similar Structures:
Biological Unit for 8Y8B: tetrameric; determined by author and by software
Molecular Components in 8Y8B
Label Count Molecule
Proteins (4 molecules)
2
Spike Glycoprotein
Molecule annotation
2
Transmembrane Protease Serine 2
Molecule annotation
Chemicals and Non-standard biopolymers (26 molecules)
1
21
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
3
beta-D-mannopyranosebeta-D-mannopyranose
3
1
alpha-D-mannopyranosealpha-D-mannopyranose
4
1
methyl 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acidmethyl 9-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303