8Y6A: Cryo-EM structure of SARS-CoV-2 Omicron BA.2.86 RBD in complex with human ACE2 and S309 Fab

PDB ID: 8Y6ADownload
MMDB ID: 249328
PDB Deposition Date: 2024/2/2
Updated in MMDB: 2024/10
Experimental Method:
electron microscopy
Resolution: 2.72  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 8Y6A: tetrameric; determined by author
Molecular Components in 8Y6A
Label Count Molecule
Proteins (4 molecules)
1
Angiotensin-converting Enzyme 2
Molecule annotation
1
Spike Protein S1
Molecule annotation
1
Heavy Chain of S309 FAB
Molecule annotation
1
Light Chain of S309 FAB
Molecule annotation
Chemicals and Non-standard biopolymers (16 molecules)
1
11
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
3
beta-D-mannopyranosebeta-D-mannopyranose
3
1
alpha-D-mannopyranosealpha-D-mannopyranose
4
1
ZINC IONZINC ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303