8XP8: Crystal structure of d(ACGmCCGT/ACGGCGT) in complex with Echinomycin

PDB ID: 8XP8Download
MMDB ID: 247713
PDB Deposition Date: 2024/1/3
Updated in MMDB: 2024/09
Experimental Method:
x-ray diffraction
Resolution: 1.64  Å
Source Organism:
Biological Unit for 8XP8: tetrameric; determined by author
Molecular Components in 8XP8
Label Count Molecule
Nucleotides(2 molecules)
1
DNA (5'-d(p*ap*cp*gp*gp*cp*gp*t)-3')
Molecule annotation
1
DNA (5'-d(p*ap*cp*gp*(5cm)p*cp*gp*t)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
DE
2
Echinomycin
1
3
MANGANESE (II) IONMANGANESE (II) ION
2
4
2-CARBOXYQUINOXALINE2-CARBOXYQUINOXALINE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303