8XLS: PSI-FCPI of the diatom Thalassiosira pseudonana CCMP1335

PDB ID: 8XLSDownload
MMDB ID: 254223
PDB Deposition Date: 2023/12/26
Updated in MMDB: 2024/11
Experimental Method:
electron microscopy
Resolution: 2.3  Å
Source Organism:
Similar Structures:
Biological Unit for 8XLS: heptadecameric; determined by author
Molecular Components in 8XLS
Label Count Molecule
Proteins (17 molecules)
1
Photosystem I P700 Chlorophyll a Apoprotein A1
(Gene symbol: psaA)
Molecule annotation
1
Photosystem I P700 Chlorophyll a Apoprotein A2
(Gene symbol: psaB)
Molecule annotation
1
Photosystem I Iron-sulfur Center
(Gene symbol: psaC)
Molecule annotation
1
Photosystem I Reaction Center Subunit II
Molecule annotation
1
Photosystem I Reaction Center Subunit IV
Molecule annotation
1
Photosystem I Reaction Center Subunit III
Molecule annotation
1
Photosystem I Reaction Center Subunit Viii
(Gene symbol: psaI)
Molecule annotation
1
Photosystem I Reaction Center Subunit IX
(Gene symbol: psaJ)
Molecule annotation
1
Photosystem I Reaction Center Subunit XI
(Gene symbol: psaL)
Molecule annotation
1
Photosystem I Reaction Center Subunit XII
(Gene symbol: psaM)
Molecule annotation
1
Photosystem I Reaction Center Subunit Psa29
Molecule annotation
1
Unknown Protein
Molecule annotation
1
Fucoxanthin Chlorophyll A/c-binding Protein Redcap
Molecule annotation
1
Fucoxanthin CHL A/C Light-harvesting Protein
Molecule annotation
1
Pt17531-like Protein
Molecule annotation
1
Fucoxanthin CHL A/C Light-harvesting Protein, Major Type
Molecule annotation
1
Fucoxanthin Chlorophyll A/c-binding Protein Lhcq8
Molecule annotation
Chemicals and Non-standard biopolymers (296 molecules)
1
1
CHLOROPHYLL A ISOMERCHLOROPHYLL A ISOMER
2
138
CHLOROPHYLL ACHLOROPHYLL A
3
2
PHYLLOQUINONEPHYLLOQUINONE
4
3
IRON/SULFUR CLUSTERIRON/SULFUR CLUSTER
5
20
BETA-CAROTENEBETA-CAROTENE
6
7
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
7
4
DODECYL-BETA-D-MALTOSIDEDODECYL-BETA-D-MALTOSIDE
8
89
UNKNOWN LIGANDUNKNOWN LIGAND
9
1
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DIGALACTOSYL DIACYL GLYCEROL (DGDG)
10
1
(1~{R})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{R} )-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol(1~{R})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{R} )-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol
11
7
(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol(3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol
12
1
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
13
7
Chlorophyll c1Chlorophyll c1
14
15
(3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate(3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303