8XK9: ternary complex of DNA polymerase SFM4-3 recognizing C2 methyoxy nucleotide

PDB ID: 8XK9Download
MMDB ID: 255714
PDB Deposition Date: 2023/12/22
Updated in MMDB: 2024/12
Experimental Method:
x-ray diffraction
Resolution: 2.4  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 8XK9: hexameric; determined by author and by software
Molecular Components in 8XK9
Label Count Molecule
Proteins (2 molecules)
2
DNA Polymerase I, Thermostable
Molecule annotation
Nucleotides(4 molecules)
2
DNA (5'-d(*gp*ap*cp*cp*ap*cp*gp*gp*cp*gp*cp*(doc))-3')
Molecule annotation
2
DNA (5'-d(*ap*ap*cp*gp*gp*cp*gp*cp*cp*gp*tp*gp*gp*tp*c)-r(p*(omg))-3')
Molecule annotation
Chemicals and Non-standard biopolymers (12 molecules)
1
6
MAGNESIUM IONMAGNESIUM ION
2
2
MAGNESIUM IONMAGNESIUM ION
3
2
DI(HYDROXYETHYL)ETHERDI(HYDROXYETHYL)ETHER
4
2
PHOSPHATE IONPHOSPHATE ION
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303