8XK4: Structure of the Argonaute protein from Kurthia massiliensis in complex with guide DNA and 19-mer target DNA in target-released state

PDB ID: 8XK4Download
MMDB ID: 257473
PDB Deposition Date: 2023/12/22
Updated in MMDB: 2025/07
Experimental Method:
electron microscopy
Resolution: 2.94  Å
Source Organism:
Similar Structures:
Biological Unit for 8XK4: trimeric; determined by author and by software
Molecular Components in 8XK4
Label Count Molecule
Protein (1 molecule)
1
Kmago
Molecule annotation
Nucleotides(2 molecules)
1
Guide DNA
Molecule annotation
1
Target DNA
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
3
MANGANESE (II) IONMANGANESE (II) ION
2
1
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303