8X41: Crystal structure of DIMT1 in complex with 5'-methylthioadenosine and adenosine from Pyrococcus horikoshii

PDB ID: 8X41Download
MMDB ID: 251549
PDB Deposition Date: 2023/11/14
Updated in MMDB: 2024/10
Experimental Method:
x-ray diffraction
Resolution: 2.35  Å
Source Organism:
Similar Structures:
Biological Unit for 8X41: monomeric; determined by author and by software (PISA)
Molecular Components in 8X41
Label Count Molecule
Protein (1 molecule)
1
Probable Ribosomal RNA Small Subunit Methyltransferase a
(Gene symbol: PH_RS08595)
Molecule annotation
Chemicals and Non-standard biopolymers (29 molecules)
1
1
5'-DEOXY-5'-METHYLTHIOADENOSINE5'-DEOXY-5'-METHYLTHIOADENOSINE
2
2
ADENOSINEADENOSINE
3
8
ZINC IONZINC ION
4
3
CHLORIDE IONCHLORIDE ION
5
2
SULFITE IONSULFITE ION
6
7
GLYCEROLGLYCEROL
7
4
1,2-ETHANEDIOL1,2-ETHANEDIOL
8
1
ACETATE IONACETATE ION
9
1
ARGININEARGININE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303