8X19: Structure of nucleosome-bound SRCAP-C in the ADP-BeFx-bound state

PDB ID: 8X19Download
MMDB ID: 243838
PDB Deposition Date: 2023/11/6
Updated in MMDB: 2024/06
Experimental Method:
electron microscopy
Resolution: 3.2  Å
Source Organism:
Similar Structures:
Biological Unit for 8X19: 25-meric; determined by author
Molecular Components in 8X19
Label Count Molecule
Proteins (23 molecules)
2
Histone H2A Type 1-C
(Gene symbol: H2AC6)
Molecule annotation
2
Histone H2B Type 1-c/e/f/g/i
(Gene symbol: H2BC4)
Molecule annotation
2
Histone H3.1
(Gene symbol: H3C1)
Molecule annotation
2
Histone H4
(Gene symbol: H4C1)
Molecule annotation
1
Helicase Srcap
(Gene symbol: SRCAP)
Molecule annotation
1
Vacuolar Protein Sorting-associated Protein 72 Homolog
(Gene symbol: VPS72)
Molecule annotation
1
Actin-related Protein 6
(Gene symbol: ACTR6)
Molecule annotation
1
Zinc Finger HIT Domain-containing Protein 1
(Gene symbol: ZNHIT1)
Molecule annotation
3
Ruvb-like 1
(Gene symbol: RUVBL1)
Molecule annotation
3
Ruvb-like 2
(Gene symbol: RUVBL2)
Molecule annotation
2
Actin, Cytoplasmic 1
(Gene symbol: ACTB)
Molecule annotation
1
Actin-like Protein 6A
(Gene symbol: ACTL6A)
Molecule annotation
1
DNA Methyltransferase 1-associated Protein 1
(Gene symbol: DMAP1)
Molecule annotation
1
Yeats Domain-containing Protein 4
(Gene symbol: YEATS4)
Molecule annotation
Nucleotides(2 molecules)
1
DNA (147-mer)
Molecule annotation
1
DNA (147-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (11 molecules)
1
7
ADENOSINE-5'-DIPHOSPHATEADENOSINE-5'-DIPHOSPHATE
2
1
MAGNESIUM IONMAGNESIUM ION
3
1
BERYLLIUM TRIFLUORIDE IONBERYLLIUM TRIFLUORIDE ION
4
2
ADENOSINE-5'-TRIPHOSPHATEADENOSINE-5'-TRIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303