8WPY: Cryo-EM structure of SARS-CoV-2 receptor-binding domain (RBD) complexed with CB6 mutant,S309, and S304 antibodies

PDB ID: 8WPYDownload
MMDB ID: 253637
PDB Deposition Date: 2023/10/10
Updated in MMDB: 2025/12
Experimental Method:
electron microscopy
Resolution: 3.02  Å
Source Organism:
Severe acute respiratory syndrome coronavirus 2▼
Similar Structures:
Biological Unit for 8WPY: heptameric; determined by author
Molecular Components in 8WPY
Label Count Molecule
Proteins (7 molecules)
1
S309 FAB Heavy Chain
Molecule annotation
1
S309 FAB Light Chain
Molecule annotation
1
CB6 FAB Mutant Heavy Chain
Molecule annotation
1
CB6 FAB Mutant Light Chain
Molecule annotation
1
S304 FAB Heavy Chain
Molecule annotation
1
S304 FAB Light Chain
Molecule annotation
1
Spike Protein S1
Molecule annotation
Chemicals and Non-standard biopolymers (4 molecules)
1
2
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
1
beta-D-mannopyranosebeta-D-mannopyranose
3
1
alpha-L-fucopyranosealpha-L-fucopyranose
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303